Complete genome sequence of Novosphingobium pentaromativorans US6-1T SCIE SCOPUS

Cited 11 time in WEB OF SCIENCE Cited 14 time in Scopus
Title
Complete genome sequence of Novosphingobium pentaromativorans US6-1T
Author(s)
Choi, Dong Hee; Kwon, Y.M.; Kwon, K.K.; Kim, S.-J.
KIOST Author(s)
Kwon, Kae Kyoung(권개경)
Publication Year
2015
Abstract
Novosphingobium pentaromativorans US6-1T is a species in the family Sphingomonadaceae. According to the phylogenetic analysis based on 16S rRNA gene sequence of the N. pentaromativorans US6-1T and nine genome-sequenced strains in the genus Novosphingobium, the similarity ranged from 93.9 to 99.9 % and the highest similarity was found with Novosphingobium sp. PP1Y (99.9 %), whereas the ANI value based on genomes ranged from 70.9 to 93 % and the highest value was 93 %. This microorganism was isolated from muddy coastal bay sediments where the environment is heavily polluted by polycyclic aromatic hydrocarbons (PAHs). It was previously shown to be capable of degrading multiple PAHs, including benzo[a]pyrene. To further understand the PAH biodegradation pathways the previous draft genome of this microorganism was revised to obtain a complete genome using Illumina MiSeq and PacBio platform. The genome of strain US6-1T consists of 5,457,578 bp, which includes the 3,979,506 bp chromosome and five megaplasmids. It comprises 5110 protein-coding genes and 82 RNA genes. Here, we provide an analysis of the complete genome sequence which enables the identification of new characteristics of this strain. © 2015 Choi et al.
ISSN
1944-3277
URI
https://sciwatch.kiost.ac.kr/handle/2020.kiost/2597
DOI
10.1186/s40793-015-0102-1
Bibliographic Citation
Standards in Genomic Sciences, v.10, no.1, 2015
Publisher
BioMed Central Ltd.
Keywords
Extradiol dioxygenase; Megaplasmids; Novosphingobium; Polycyclic aromatic hydrocarbon
Type
Article
Language
English
Document Type
Article
Publisher
BioMed Central Ltd.
Related Researcher
Research Interests

Acquisition of marine microbial bioresources,Marine microbial diversity,Application study on marine microbes,해양미생물 자원 확보,해양미생물 다양성,해양미생물 기능 활용

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