Complete genome sequence of Novosphingobium pentaromativorans US6-1T SCIE SCOPUS

DC Field Value Language Choi, Dong Hee - Kwon, Y.M. - Kwon, K.K. - Kim, S.-J. - 2020-04-20T03:55:23Z - 2020-04-20T03:55:23Z - 2020-01-28 - 2015 -
dc.identifier.issn 1944-3277 -
dc.identifier.uri -
dc.description.abstract Novosphingobium pentaromativorans US6-1T is a species in the family Sphingomonadaceae. According to the phylogenetic analysis based on 16S rRNA gene sequence of the N. pentaromativorans US6-1T and nine genome-sequenced strains in the genus Novosphingobium, the similarity ranged from 93.9 to 99.9 % and the highest similarity was found with Novosphingobium sp. PP1Y (99.9 %), whereas the ANI value based on genomes ranged from 70.9 to 93 % and the highest value was 93 %. This microorganism was isolated from muddy coastal bay sediments where the environment is heavily polluted by polycyclic aromatic hydrocarbons (PAHs). It was previously shown to be capable of degrading multiple PAHs, including benzo[a]pyrene. To further understand the PAH biodegradation pathways the previous draft genome of this microorganism was revised to obtain a complete genome using Illumina MiSeq and PacBio platform. The genome of strain US6-1T consists of 5,457,578 bp, which includes the 3,979,506 bp chromosome and five megaplasmids. It comprises 5110 protein-coding genes and 82 RNA genes. Here, we provide an analysis of the complete genome sequence which enables the identification of new characteristics of this strain. © 2015 Choi et al. -
dc.description.uri 1 -
dc.language English -
dc.publisher BioMed Central Ltd. -
dc.title Complete genome sequence of Novosphingobium pentaromativorans US6-1T -
dc.type Article -
dc.citation.title Standards in Genomic Sciences -
dc.citation.volume 10 -
dc.citation.number 1 -
dc.identifier.bibliographicCitation Standards in Genomic Sciences, v.10, no.1 -
dc.identifier.doi 10.1186/s40793-015-0102-1 -
dc.identifier.scopusid 2-s2.0-84947443170 -
dc.identifier.wosid 000368003000003 -
dc.type.docType Article -
dc.description.journalClass 1 -
dc.description.isOpenAccess N -
dc.subject.keywordPlus genomic DNA -
dc.subject.keywordPlus polycyclic aromatic hydrocarbon -
dc.subject.keywordPlus RNA 16S -
dc.subject.keywordPlus untranslated RNA -
dc.subject.keywordPlus Article -
dc.subject.keywordPlus bacterial chromosome -
dc.subject.keywordPlus bacterial gene -
dc.subject.keywordPlus bacterial genome -
dc.subject.keywordPlus bacterial metabolism -
dc.subject.keywordPlus bacterial strain -
dc.subject.keywordPlus bacterium culture -
dc.subject.keywordPlus biodegradation -
dc.subject.keywordPlus bioinformatics -
dc.subject.keywordPlus clustered regularly interspaced short palindromic repeat -
dc.subject.keywordPlus DNA base composition -
dc.subject.keywordPlus gene function -
dc.subject.keywordPlus gene sequence -
dc.subject.keywordPlus genome analysis -
dc.subject.keywordPlus genome size -
dc.subject.keywordPlus molecular genetics -
dc.subject.keywordPlus nonhuman -
dc.subject.keywordPlus Novosphingobium pentaromativorans -
dc.subject.keywordPlus nucleotide sequence -
dc.subject.keywordPlus nucleotide sequence -
dc.subject.keywordPlus phylogenetic tree -
dc.subject.keywordPlus phylogeny -
dc.subject.keywordPlus pseudogene -
dc.subject.keywordPlus RNA gene -
dc.subject.keywordPlus sequence analysis -
dc.subject.keywordAuthor Extradiol dioxygenase -
dc.subject.keywordAuthor Megaplasmids -
dc.subject.keywordAuthor Novosphingobium -
dc.subject.keywordAuthor Polycyclic aromatic hydrocarbon -
dc.description.journalRegisteredClass scie -
dc.description.journalRegisteredClass scopus -
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Marine Resources Research Division > Marine Biotechnology Research Center > 1. Journal Articles
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