Complete mitochondrial genome of Upogebia yokoyai (Decapoda, Crustaceae) from Jejudo, Korea

Title
Complete mitochondrial genome of Upogebia yokoyai (Decapoda, Crustaceae) from Jejudo, Korea
Author(s)
양은찬; 이지민; 안성민; 최동한; 노재훈
KIOST Author(s)
Yang, Eun Chan(양은찬)Lee, Ji Min(이지민)Choi, Dong Han(최동한)Noh, Jae Hoon(노재훈)
Publication Year
2014-10-27
Abstract
The complete mitochondrial DNA of an ecologically important crustacean mud shrimp, Upogebia yokoyai (Decapoda, Crustacea) was sequenced. We used next generation sequencing strategy for total genomic DNA and organelle genome pipeline for mitogenome assembly. A newly determined mitogenome was 16,063 bp in total length with 28% of GC content. Thirtyseven genes were identified including 13 protein-coding genes, 2 rRNA genes, and 22 tRNA genes. We found ten case of overlapping between neighboring genes. Based on genome comparison, the mitogenome of U. yokoyai shows general crustacean gene content and identical synteny to the sister species, such as U. major and U. pusilla. Our results will provide useful information for mitochondrial genome diversity and evolution of the Crustacea.ogenome assembly. A newly determined mitogenome was 16,063 bp in total length with 28% of GC content. Thirtyseven genes were identified including 13 protein-coding genes, 2 rRNA genes, and 22 tRNA genes. We found ten case of overlapping between neighboring genes. Based on genome comparison, the mitogenome of U. yokoyai shows general crustacean gene content and identical synteny to the sister species, such as U. major and U. pusilla. Our results will provide useful information for mitochondrial genome diversity and evolution of the Crustacea.
URI
https://sciwatch.kiost.ac.kr/handle/2020.kiost/40917
Bibliographic Citation
Mitochondrial DNA, pp.1, 2014
Publisher
Informa Healthcare
Type
Conference
Language
English
Publisher
Informa Healthcare
Related Researcher
Research Interests

Algae,Systematics,Ecology,조류,계통,생태

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