GENOMIC APPROACH FOR ENVIRONMENTAL STRESS ASSESSMENT IN KUROSHIO LINKED CORAL, SCLERONEPHTHYA GRACILLIMUM
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Title
- GENOMIC APPROACH FOR ENVIRONMENTAL STRESS ASSESSMENT IN KUROSHIO LINKED CORAL, SCLERONEPHTHYA GRACILLIMUM
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Author(s)
- 우선옥; 황성진; Vianney Denis; Stepahane De Palmas; Fumihito Iwase; Yukimitsu Imahara; Chanolun A. Chen; Jun-Im Song; 염승식
- KIOST Author(s)
- Woo, Seon Ock(우선옥); Yum, Seung Shic(염승식)
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Alternative Author(s)
- 우선옥; 염승식
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Publication Year
- 2013-04-01
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Abstract
- Motivated by the precarious state of coral ecosystem, there is currently a keen interest in coral transcriptomics. By investigating changes in coral gene expression triggered by particular environmental stressors, we can characterize coral stress responses at molecular level, which develop powerful diagnostic tools for evaluating coral health in the field. Toward this end, we performed NGS of the soft coral, Scleronephthya gracillimum, a geographically spread through the Kuroshio current species and developed oligoarray using approximately 34,000 clones. Total 33,401 reads were input to analyze KOG categorization and 32.42% of reads were successfully categorized, 2.14%, uncharacterized and 67.58% were not hit in the known information using BLASTx algorithm.ral stress responses at molecular level, which develop powerful diagnostic tools for evaluating coral health in the field. Toward this end, we performed NGS of the soft coral, Scleronephthya gracillimum, a geographically spread through the Kuroshio current species and developed oligoarray using approximately 34,000 clones. Total 33,401 eads were input to analyze KOG categorization and 32.42% of reads were successfully categorized, 2.14%, uncharacterized and 67.58% were not hit in the known information using BLASTx algorithm.
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URI
- https://sciwatch.kiost.ac.kr/handle/2020.kiost/27168
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Bibliographic Citation
- 2013 Hydrobiologia, pp.219, 2013
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Publisher
- Hydrobiologia
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Type
- Conference
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Language
- English
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