Complete genome sequence of Celeribacter marinus IMCC12053T, the host strain of marine bacteriophage P12053L SCIE SCOPUS

Cited 6 time in WEB OF SCIENCE Cited 9 time in Scopus
Title
Complete genome sequence of Celeribacter marinus IMCC12053T, the host strain of marine bacteriophage P12053L
Author(s)
Yang, J.-A.; Kang, I.; Moon, M.; Ryu, U.-C.; Kwon, K.K.; Cho, J.-C.; Oh, H.-M.
KIOST Author(s)
Kwon, Kae Kyoung(권개경)
Publication Year
2016
Abstract
Isolated from coastal seawater from Yellow Sea of Korea, Celeribacter marinus IMCC12053 was used as the host bacterium for bacteriophage P12053L. Here we report the complete genome sequence of strain IMCC12053 for further study of the marine bacteriophage P12053L functional genes. Single molecule real-time technology (PacBio RSII) was used for the single circular chromosome that is 3,096,705 base pairs in length and the GC content is 56.24%. It contains 3155 ORFs with 45 tRNAs and 6 rRNAs genes. N6-methyladenosine patterns were also investigated for 32 unmethylated genes and intergenic regions that covered many regulators and phage genes as well as ribosomal RNA genes and tRNA genes. Cryptic N4-methylcytosine pattern was investigated to speculate GpC methylase activity throughout the genome. Comparative genomics with other Celeribacter genomes were carried out for polyaromatic hydrocarbon degradation, but there were no aromatic ring oxygenases in IMCC12053 when compared to Celeribacter indicus P73. © 2015 Elsevier B.V.
ISSN
1874-7787
URI
https://sciwatch.kiost.ac.kr/handle/2020.kiost/2304
DOI
10.1016/j.margen.2015.11.012
Bibliographic Citation
Marine Genomics, v.26, pp.5 - 7, 2016
Publisher
Elsevier B.V.
Subject
bacterial DNA; aquatic species; bacterial genome; bacteriophage; genetics; physiology; Rhodobacteraceae; species difference; virology; Aquatic Organisms; Bacteriophages; DNA, Bacterial; Genome, Bacterial; Rhodobacteraceae; Species Specificity
Keywords
Celeribacter marinus; Marine bacteriophage; P12053L; SMRT (single molecule real-time sequencing)
Type
Article
Language
English
Document Type
Article
Publisher
Elsevier B.V.
Related Researcher
Research Interests

Acquisition of marine microbial bioresources,Marine microbial diversity,Application study on marine microbes,해양미생물 자원 확보,해양미생물 다양성,해양미생물 기능 활용

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