Serinicoccus sediminis sp. nov., isolated from tidal flat sediment SCIE SCOPUS

DC Field Value Language
dc.contributor.author Lee, Dong Wan -
dc.contributor.author Yoo, Yeonjae -
dc.contributor.author Lee, Hanbyul -
dc.contributor.author Kwon, Bong-Oh -
dc.contributor.author Khim, Jong Seong -
dc.contributor.author Yim, Un Hyuk -
dc.contributor.author Kim, Beom Seok -
dc.contributor.author Kim, Gyu-Hyeok -
dc.contributor.author Kim, Jae-Jin -
dc.date.accessioned 2020-04-16T07:40:28Z -
dc.date.available 2020-04-16T07:40:28Z -
dc.date.created 2020-02-04 -
dc.date.issued 2019-07 -
dc.identifier.issn 1466-5026 -
dc.identifier.uri https://sciwatch.kiost.ac.kr/handle/2020.kiost/597 -
dc.description.abstract A novel Gram-strain-positive, non-spore-forming bacterial strain, designated GP-T3-3(T), was isolated from sediment sampled at a tidal flat in Gopado, Republic of Korea. Cells were aerobic, catalase-negative, oxidase-positive, non-motile cocci that occurred singly, in pairs or in clusters. Strain GP-T3-3(T) grew at 4-45 degrees C (optimum, 28-37 degrees C), at pH 4.0-12.0 (pH 8.0-9.0) and in the presence of 0-15 % (w/v) NaCl (3-5 %). Colonies of strain GP-T3-3(T) were deep-yellow, circular, smooth and pulvinate. The results of the phylogenetic analyses based on 16S rRNA gene sequences indicated that strain GP-T3-3(T) was closely related to Serinicoccus profundi MCCC 1A05965(T) (99.1 %), Serinicoccus chungangensis CAU 9536(T) (99.0 %) and Serinicoccus marinus JC1078(T) (98.0 %). The diagnostic diamino acid in the cell-wall peptidoglycan was meso-diaminopimelic acid. The predominant respiratory quinone was MK-8(H-4) and the major fatty acids were anteiso-C-17:0, iso-C-16:0, iso-C(15:0 )and anteiso C-15:0. The polar lipid profile consisted of diphosphadidylglycerol, phosphadidylglycerol, phosphatidylcholine, phosphatidylinositol and two unidentified phospholipids. The DNA G+C content was 72.9 mol%. DNA-DNA relatedness values between strain GP-T3-3(T) and type strains of the genus Serinicoccus ranged from 28.9 to 50.5 %. On the basis of the phenotypic differences and DNA-DNA relatedness data, the isolate represents a new species of the genus Serinicoccus, for which the name Serinicoccus sediminis sp. nov. is proposed. The type strain is GP-T3-3(T) (=KCTC 49173 (T) =JCM 32825(T) =KCCM 43309(T) =KACC 19850(T)). -
dc.description.uri 1 -
dc.language English -
dc.publisher MICROBIOLOGY SOC -
dc.subject DEOXYRIBONUCLEIC-ACID -
dc.subject EMENDED DESCRIPTION -
dc.subject ACTINOMYCETE -
dc.subject SEQUENCES -
dc.subject DNA -
dc.title Serinicoccus sediminis sp. nov., isolated from tidal flat sediment -
dc.type Article -
dc.citation.endPage 2003 -
dc.citation.startPage 1998 -
dc.citation.title INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY -
dc.citation.volume 69 -
dc.citation.number 7 -
dc.contributor.alternativeName 임운혁 -
dc.identifier.bibliographicCitation INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY, v.69, no.7, pp.1998 - 2003 -
dc.identifier.doi 10.1099/ijsem.0.003415 -
dc.identifier.scopusid 2-s2.0-85069234599 -
dc.identifier.wosid 000473325500024 -
dc.type.docType Article -
dc.description.journalClass 1 -
dc.subject.keywordPlus DEOXYRIBONUCLEIC-ACID -
dc.subject.keywordPlus EMENDED DESCRIPTION -
dc.subject.keywordPlus ACTINOMYCETE -
dc.subject.keywordPlus SEQUENCES -
dc.subject.keywordPlus DNA -
dc.subject.keywordAuthor Actinobacteria -
dc.subject.keywordAuthor meso-diaminopimelic acid -
dc.subject.keywordAuthor polyphasic approach -
dc.subject.keywordAuthor tidal flat -
dc.subject.keywordAuthor Serinicoccus -
dc.relation.journalWebOfScienceCategory Microbiology -
dc.description.journalRegisteredClass scie -
dc.description.journalRegisteredClass scopus -
dc.relation.journalResearchArea Microbiology -
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