Photobacterium frigidiphilum sp. nov., a psychrophilic, lipolytic bacterium isolated from deep-sea sediments of Edison Seamount SCIE SCOPUS

DC Field Value Language
dc.contributor.author Seo, H.J. -
dc.contributor.author Bae, S.S. -
dc.contributor.author Lee, J.-H. -
dc.contributor.author Kim, S.-J. -
dc.date.accessioned 2020-04-20T14:40:02Z -
dc.date.available 2020-04-20T14:40:02Z -
dc.date.created 2020-01-28 -
dc.date.issued 2005 -
dc.identifier.issn 1466-5026 -
dc.identifier.uri https://sciwatch.kiost.ac.kr/handle/2020.kiost/5116 -
dc.description.abstract A Gram-negative, motile, rod-shaped, psychrophilic and weakly halophilic bacterial strain, SL13T, was isolated from deep-sea sediments (1450 m depth) of Edison Seamount in the western Pacific Ocean. Optimal growth of SL13T requires the presence of 1.5% (w/v) NaCl, a pH of 6.0 and a temperature of 14 °C. The whole-cell fatty acid profile of the isolate includes C16:1 and C16:0 as major fatty acids and contains C20:5ω3. This is consistent with corresponding data for Photobacterium profundum. The DNA G+C content of strain SL13T is 43.8 mol%. Phylogenetic analyses of 16S rRNA gene sequences place this bacterium in the 'Gammaproteobacteria', within the genus Photobacterium. Sequence similarity analysis indicates that the closest relatives of strain SL13T are Photobacterium indicum (99.3%), P. profundum (98.5%) and Photobacterium lipolyticum (98.2%). The DNA-DNA hybridization levels between the isolate and its closest known phylogenetic relatives, P. indicum, P. profundum and P. lipolyticum, are 27.1, 52.4 and 20.2%, respectively. Thus strain SL13T represents a novel species of the genus Photobacterium, for which the name Photobacterium frigidiphilum sp. nov. is proposed. The type strain is SL13T (=KCTC 12384T=JCM 12947T). © 2005 IUMS. -
dc.description.uri 1 -
dc.language English -
dc.subject bacterial DNA -
dc.subject bacterial RNA -
dc.subject cytosine -
dc.subject fatty acid -
dc.subject guanine -
dc.subject ribosome RNA -
dc.subject RNA 16S -
dc.subject sodium chloride -
dc.subject acidity -
dc.subject article -
dc.subject bacterial cell -
dc.subject bacterial growth -
dc.subject bacterial strain -
dc.subject bacterioplankton -
dc.subject bacterium isolation -
dc.subject deep sea -
dc.subject DNA DNA hybridization -
dc.subject Gammaproteobacteria -
dc.subject gene sequence -
dc.subject genus -
dc.subject Gram negative bacterium -
dc.subject molecular phylogeny -
dc.subject new species -
dc.subject nonhuman -
dc.subject nucleotide sequence -
dc.subject Pacific Ocean -
dc.subject pH -
dc.subject Photobacterium -
dc.subject Photobacterium frigidiphilum -
dc.subject Photobacterium indicum -
dc.subject Photobacterium lipolyticum -
dc.subject Photobacterium phosphoreum -
dc.subject priority journal -
dc.subject sequence analysis -
dc.subject sequence homology -
dc.subject temperature dependence -
dc.subject Bacterial Typing Techniques -
dc.subject Base Composition -
dc.subject Cold -
dc.subject DNA, Bacterial -
dc.subject DNA, Ribosomal -
dc.subject Fatty Acids -
dc.subject Genes, rRNA -
dc.subject Geologic Sediments -
dc.subject Molecular Sequence Data -
dc.subject Photobacterium -
dc.subject Phylogeny -
dc.subject RNA, Ribosomal, 16S -
dc.subject Seawater -
dc.subject Sequence Analysis, DNA -
dc.subject Sodium Chloride -
dc.subject Gammaproteobacteria -
dc.subject Hyphomicrobium indicum -
dc.subject Negibacteria -
dc.subject Photobacterium -
dc.subject Photobacterium lipolyticum -
dc.subject Photobacterium profundum -
dc.title Photobacterium frigidiphilum sp. nov., a psychrophilic, lipolytic bacterium isolated from deep-sea sediments of Edison Seamount -
dc.type Article -
dc.citation.endPage 1666 -
dc.citation.startPage 1661 -
dc.citation.title International Journal of Systematic and Evolutionary Microbiology -
dc.citation.volume 55 -
dc.citation.number 4 -
dc.contributor.alternativeName 배승섭 -
dc.contributor.alternativeName 이정현 -
dc.contributor.alternativeName 김상진 -
dc.identifier.bibliographicCitation International Journal of Systematic and Evolutionary Microbiology, v.55, no.4, pp.1661 - 1666 -
dc.identifier.doi 10.1099/ijs.0.63338-0 -
dc.identifier.scopusid 2-s2.0-22544453912 -
dc.identifier.wosid 000230828200042 -
dc.type.docType Article -
dc.description.journalClass 1 -
dc.subject.keywordPlus bacterial DNA -
dc.subject.keywordPlus bacterial RNA -
dc.subject.keywordPlus cytosine -
dc.subject.keywordPlus fatty acid -
dc.subject.keywordPlus guanine -
dc.subject.keywordPlus ribosome RNA -
dc.subject.keywordPlus RNA 16S -
dc.subject.keywordPlus sodium chloride -
dc.subject.keywordPlus acidity -
dc.subject.keywordPlus article -
dc.subject.keywordPlus bacterial cell -
dc.subject.keywordPlus bacterial growth -
dc.subject.keywordPlus bacterial strain -
dc.subject.keywordPlus bacterioplankton -
dc.subject.keywordPlus bacterium isolation -
dc.subject.keywordPlus deep sea -
dc.subject.keywordPlus DNA DNA hybridization -
dc.subject.keywordPlus Gammaproteobacteria -
dc.subject.keywordPlus gene sequence -
dc.subject.keywordPlus genus -
dc.subject.keywordPlus Gram negative bacterium -
dc.subject.keywordPlus molecular phylogeny -
dc.subject.keywordPlus new species -
dc.subject.keywordPlus nonhuman -
dc.subject.keywordPlus nucleotide sequence -
dc.subject.keywordPlus Pacific Ocean -
dc.subject.keywordPlus pH -
dc.subject.keywordPlus Photobacterium -
dc.subject.keywordPlus Photobacterium frigidiphilum -
dc.subject.keywordPlus Photobacterium indicum -
dc.subject.keywordPlus Photobacterium lipolyticum -
dc.subject.keywordPlus Photobacterium phosphoreum -
dc.subject.keywordPlus priority journal -
dc.subject.keywordPlus sequence analysis -
dc.subject.keywordPlus sequence homology -
dc.subject.keywordPlus temperature dependence -
dc.subject.keywordPlus Bacterial Typing Techniques -
dc.subject.keywordPlus Base Composition -
dc.subject.keywordPlus Cold -
dc.subject.keywordPlus DNA, Bacterial -
dc.subject.keywordPlus DNA, Ribosomal -
dc.subject.keywordPlus Fatty Acids -
dc.subject.keywordPlus Genes, rRNA -
dc.subject.keywordPlus Geologic Sediments -
dc.subject.keywordPlus Molecular Sequence Data -
dc.subject.keywordPlus Photobacterium -
dc.subject.keywordPlus Phylogeny -
dc.subject.keywordPlus RNA, Ribosomal, 16S -
dc.subject.keywordPlus Seawater -
dc.subject.keywordPlus Sequence Analysis, DNA -
dc.subject.keywordPlus Sodium Chloride -
dc.subject.keywordPlus Gammaproteobacteria -
dc.subject.keywordPlus Hyphomicrobium indicum -
dc.subject.keywordPlus Negibacteria -
dc.subject.keywordPlus Photobacterium -
dc.subject.keywordPlus Photobacterium lipolyticum -
dc.subject.keywordPlus Photobacterium profundum -
dc.description.journalRegisteredClass scie -
dc.description.journalRegisteredClass scopus -
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