Sensing domain and extension rate of a family B-type DNA polymerase determine the stalling at a deaminated base SCIE SCOPUS KCI
DC Field | Value | Language |
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dc.contributor.author | Kim, Yun Jae | - |
dc.contributor.author | Cha, Sun-Shin | - |
dc.contributor.author | Lee, Hyun Sook | - |
dc.contributor.author | Ryu, Yong Gu | - |
dc.contributor.author | Bae, Seung Seob | - |
dc.contributor.author | Cho, Yona | - |
dc.contributor.author | Cho, Hyun-Soo | - |
dc.contributor.author | Kim, Sang-Jin | - |
dc.contributor.author | Kwon, Suk-Tae | - |
dc.contributor.author | Lee, Jung-Hyun | - |
dc.contributor.author | Kang, Sung Gyun | - |
dc.date.accessioned | 2020-04-20T10:40:39Z | - |
dc.date.available | 2020-04-20T10:40:39Z | - |
dc.date.created | 2020-01-28 | - |
dc.date.issued | 2008-08 | - |
dc.identifier.issn | 1017-7825 | - |
dc.identifier.uri | https://sciwatch.kiost.ac.kr/handle/2020.kiost/4476 | - |
dc.description.abstract | The uracil-sensing domain in archaeal family B-type DNA polymerases recognizes pro-mutagenic uracils in the DNA template, leading to stalling of DNA polymerases. Here, we describe our new findings regarding the molecular mechanism underpinning the stalling of polymerases. We observed that two successive deaminated bases were required to stall TNA1 and KOD1 DNA polymerases, whereas a single deaminated base was enough for stalling Pfu DNA polymerase, in spite of the virtually identical uracil-sensing domains. TNA1 and KOD1 DNA polymerases; have a much higher extension rate than Pfu DNA polymerase; decreasing the extension rate resulted in stalling by TNA1 and KOD1 DNA polymerases at a single deaminated base. These results strongly suggest that these polymerases require two factors to stop DNA polymerization at a single deaminated base: the presence of the uracil-sensing domain and a relatively slow extension rate. | - |
dc.description.uri | 1 | - |
dc.language | English | - |
dc.publisher | KOREAN SOC MICROBIOLOGY & BIOTECHNOLOGY | - |
dc.subject | THERMOCOCCUS-ONNURINEUS NA1 | - |
dc.subject | HYPERTHERMOPHILIC ARCHAEON | - |
dc.subject | BIOCHEMICAL-CHARACTERIZATION | - |
dc.subject | DEOXYRIBONUCLEIC-ACID | - |
dc.subject | URACIL | - |
dc.subject | PCR | - |
dc.subject | REPLICATION | - |
dc.subject | RECOGNITION | - |
dc.subject | GLYCOSYLASE | - |
dc.subject | INSTABILITY | - |
dc.title | Sensing domain and extension rate of a family B-type DNA polymerase determine the stalling at a deaminated base | - |
dc.type | Article | - |
dc.citation.endPage | 1385 | - |
dc.citation.startPage | 1377 | - |
dc.citation.title | JOURNAL OF MICROBIOLOGY AND BIOTECHNOLOGY | - |
dc.citation.volume | 18 | - |
dc.citation.number | 8 | - |
dc.contributor.alternativeName | 김윤재 | - |
dc.contributor.alternativeName | 차선신 | - |
dc.contributor.alternativeName | 이현숙 | - |
dc.contributor.alternativeName | 배승섭 | - |
dc.contributor.alternativeName | 김상진 | - |
dc.contributor.alternativeName | 이정현 | - |
dc.contributor.alternativeName | 강성균 | - |
dc.identifier.bibliographicCitation | JOURNAL OF MICROBIOLOGY AND BIOTECHNOLOGY, v.18, no.8, pp.1377 - 1385 | - |
dc.identifier.scopusid | 2-s2.0-56749103925 | - |
dc.identifier.wosid | 000258787500005 | - |
dc.type.docType | Article | - |
dc.identifier.kciid | ART001274826 | - |
dc.description.journalClass | 1 | - |
dc.subject.keywordPlus | THERMOCOCCUS-ONNURINEUS NA1 | - |
dc.subject.keywordPlus | HYPERTHERMOPHILIC ARCHAEON | - |
dc.subject.keywordPlus | BIOCHEMICAL-CHARACTERIZATION | - |
dc.subject.keywordPlus | DEOXYRIBONUCLEIC-ACID | - |
dc.subject.keywordPlus | URACIL | - |
dc.subject.keywordPlus | PCR | - |
dc.subject.keywordPlus | REPLICATION | - |
dc.subject.keywordPlus | RECOGNITION | - |
dc.subject.keywordPlus | GLYCOSYLASE | - |
dc.subject.keywordPlus | INSTABILITY | - |
dc.subject.keywordAuthor | archaeal family B-type DNA polymerase | - |
dc.subject.keywordAuthor | uracil sensing | - |
dc.subject.keywordAuthor | TNA1 DNA polymerase | - |
dc.subject.keywordAuthor | extension rate | - |
dc.subject.keywordAuthor | hypoxanthine | - |
dc.relation.journalWebOfScienceCategory | Biotechnology & Applied Microbiology | - |
dc.relation.journalWebOfScienceCategory | Microbiology | - |
dc.description.journalRegisteredClass | scie | - |
dc.description.journalRegisteredClass | scopus | - |
dc.description.journalRegisteredClass | kci | - |
dc.relation.journalResearchArea | Biotechnology & Applied Microbiology | - |
dc.relation.journalResearchArea | Microbiology | - |