First transcriptome assembly of the temperate azooxanthellate octocoral Eleutherobia rubra SCIE SCOPUS

DC Field Value Language
dc.contributor.author Ryu, Taewoo -
dc.contributor.author Cho, In-Young -
dc.contributor.author Hwang, Sung-Jin -
dc.contributor.author Yum, Seungshic -
dc.contributor.author Kim, Min-Seop -
dc.contributor.author Woo, Seonock -
dc.date.accessioned 2020-04-16T07:05:15Z -
dc.date.available 2020-04-16T07:05:15Z -
dc.date.created 2020-02-04 -
dc.date.issued 2019-12 -
dc.identifier.issn 1874-7787 -
dc.identifier.uri https://sciwatch.kiost.ac.kr/handle/2020.kiost/443 -
dc.description.abstract Eleutherobia rubra (Brundin, 1896) is a temperate asymbiotic octocoral, distributed around Korea, Japan, the west coast of the USA, and northwest Australia. This soft coral is particularly found in the East, West, and South Seas around the Korean Peninsula, so it is useful for investigating the stress responses of corals to rising seawater temperatures around the Korean Peninsula simultaneously and the effects of climate change on coral ecosystems in temperate regions. One individual of E. rubra (Anthozoa: Alcyonacea: Alcyoniidae) was collected around Pohang, South Korea (36 degrees 00 ' 17.7 '' N, 129 degrees 35 ' 12.1 '' E) and extracted total RNA to construct the transcriptome assembly. The Illumina HiSeq3000 platform was used for the transcriptome sequencing and 32,624 coding sequences were predicted by the de novo assembly and analysis of the coding regions. This is the first transcriptome assembly for the genus Eleutherobia. The transcriptome information for E. rubra will be a valuable resource for studying the transcriptomic changes in temperate and cold-water corals in response to environmental stresses. -
dc.description.uri 1 -
dc.language English -
dc.publisher ELSEVIER -
dc.subject READ ALIGNMENT -
dc.subject CORAL -
dc.subject RESILIENCE -
dc.subject FUTURE -
dc.title First transcriptome assembly of the temperate azooxanthellate octocoral Eleutherobia rubra -
dc.type Article -
dc.citation.endPage 55 -
dc.citation.startPage 52 -
dc.citation.title MARINE GENOMICS -
dc.citation.volume 48 -
dc.contributor.alternativeName 염승식 -
dc.contributor.alternativeName 우선옥 -
dc.identifier.bibliographicCitation MARINE GENOMICS, v.48, pp.52 - 55 -
dc.identifier.doi 10.1016/j.margen.2019.04.007 -
dc.identifier.scopusid 2-s2.0-85064449939 -
dc.identifier.wosid 000500380200007 -
dc.type.docType Article -
dc.description.journalClass 1 -
dc.subject.keywordPlus READ ALIGNMENT -
dc.subject.keywordPlus CORAL -
dc.subject.keywordPlus RESILIENCE -
dc.subject.keywordPlus FUTURE -
dc.subject.keywordAuthor Eleutherobia rubra -
dc.subject.keywordAuthor Coral -
dc.subject.keywordAuthor Transcriptome -
dc.subject.keywordAuthor Soft coral -
dc.subject.keywordAuthor Azooxnthellate -
dc.relation.journalWebOfScienceCategory Genetics & Heredity -
dc.relation.journalWebOfScienceCategory Marine & Freshwater Biology -
dc.description.journalRegisteredClass scie -
dc.description.journalRegisteredClass scopus -
dc.relation.journalResearchArea Genetics & Heredity -
dc.relation.journalResearchArea Marine & Freshwater Biology -
Appears in Collections:
Marine Resources & Environment Research Division > Marine Biotechnology &Bioresource Research Department > 1. Journal Articles
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