Comparative Genome and Evolution Analyses of an Endangered Stony Coral Species Dendrophyllia cribrosa Near Dokdo Islands in the East Sea SCIE SCOPUS
DC Field | Value | Language |
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dc.contributor.author | Kim, Jungeun | - |
dc.contributor.author | Choi, Jae Pil | - |
dc.contributor.author | Kim, Min Sun | - |
dc.contributor.author | Jo, Ye Jin | - |
dc.contributor.author | Min, Won Gi | - |
dc.contributor.author | Woo, Seon Ock | - |
dc.contributor.author | Yum, Seung Shic | - |
dc.contributor.author | Bhak, Jong | - |
dc.date.accessioned | 2022-09-26T01:50:44Z | - |
dc.date.available | 2022-09-26T01:50:44Z | - |
dc.date.created | 2022-09-19 | - |
dc.date.issued | 2022-09 | - |
dc.identifier.issn | 1759-6653 | - |
dc.identifier.uri | https://sciwatch.kiost.ac.kr/handle/2020.kiost/43161 | - |
dc.description.abstract | Stony corals often harbor intracellular photosynthetic dinoflagellate algae that receive dissolved inorganic nutrients. However, Dendrophyllia cribrosa is a nonsymbiotic stony coral distributed in the western Pacific. We assembled a chromosome-level D. cribrosa genome using PacBio and Hi-C technologies. The final assembly was 625 Mb, distributed on 14 chromosomes, and contained 30,493 protein-coding genes. The Benchmarking Universal Single-Copy Orthologs analysis revealed a percentage of 96.8 of the metazoan genome. A comparative phylogenetic analysis revealed that D. cribrosa, which lacks symbionts, evolved to acquire cellular energy by expanding genes related to acyl-CoA metabolism and carbohydrate transporters. This species also has expanded immune-related genes involved in the receptor protein tyrosine kinase signaling pathway. In addition, we observed a specific expansion of calcification genes, such as coral acid-rich proteins and carbonic anhydrase, in D. cribrosa. This high-quality reference genome and comparative analysis provides insights into the ecology and evolution of nonsymbiotic stony corals. | - |
dc.description.uri | 1 | - |
dc.language | English | - |
dc.publisher | Oxford University Press | - |
dc.title | Comparative Genome and Evolution Analyses of an Endangered Stony Coral Species Dendrophyllia cribrosa Near Dokdo Islands in the East Sea | - |
dc.type | Article | - |
dc.citation.title | Genome Biology and Evolution | - |
dc.citation.volume | 14 | - |
dc.citation.number | 9 | - |
dc.contributor.alternativeName | 조예진 | - |
dc.contributor.alternativeName | 민원기 | - |
dc.contributor.alternativeName | 우선옥 | - |
dc.contributor.alternativeName | 염승식 | - |
dc.identifier.bibliographicCitation | Genome Biology and Evolution, v.14, no.9 | - |
dc.identifier.doi | 10.1093/gbe/evac132 | - |
dc.identifier.scopusid | 2-s2.0-85138446333 | - |
dc.identifier.wosid | 000851626700001 | - |
dc.type.docType | Article | - |
dc.description.journalClass | 1 | - |
dc.description.isOpenAccess | Y | - |
dc.subject.keywordPlus | SEQUENCE | - |
dc.subject.keywordPlus | ALIGNMENT | - |
dc.subject.keywordPlus | RNA | - |
dc.subject.keywordPlus | ANNOTATION | - |
dc.subject.keywordAuthor | Dendrophyllia cribrosa | - |
dc.subject.keywordAuthor | comparative genome | - |
dc.subject.keywordAuthor | comparative evolution | - |
dc.subject.keywordAuthor | stony coral | - |
dc.subject.keywordAuthor | chromosome-level assembly | - |
dc.relation.journalWebOfScienceCategory | Evolutionary Biology | - |
dc.relation.journalWebOfScienceCategory | Genetics & Heredity | - |
dc.description.journalRegisteredClass | scie | - |
dc.description.journalRegisteredClass | scopus | - |
dc.relation.journalResearchArea | Evolutionary Biology | - |
dc.relation.journalResearchArea | Genetics & Heredity | - |