Identification of functional gene in a soft coral Dendronephthya gigantea by de novo RNA sequencing

Title
Identification of functional gene in a soft coral Dendronephthya gigantea by de novo RNA sequencing
Author(s)
조예진; 이나윤; 염승식; 우선옥
KIOST Author(s)
Jo, Yejin(조예진)Lee, Na Yun(이나윤)Yum, Seungshic(염승식)
Publication Year
2019-05-16
Abstract
RNA sequencing (RNA-seq) was carried out to generate functional gene in a soft coral species, Dendronephthya gigantea. Total of 122 MB was read and 437,569 bases were obtained. The sequencing of D. gignatea generated 33,401 contigs with anaverage size of 535 bp. BLAST sequence similarity searching assigned putative function to 33% of the data set, with a significant proportion of these transcripts being involved in signal transduction mechanism and posttranslational modification as defined by KOG molecular function and biological process classifications. The database will be used for various analyses of biological responses at transcript level in D. gigantea to environmental changes including climate changes,ocean acidification, and anthropogenic pollution.
URI
https://sciwatch.kiost.ac.kr/handle/2020.kiost/22681
Bibliographic Citation
2019년도 한국해양과학기술협의회 공동학술대회, pp.116, 2019
Publisher
한국해양학회
Type
Conference
Language
English
Publisher
한국해양학회
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