De novo assembly of the jellyfish, Nemophilema nomurai genome

DC Field Value Language
dc.contributor.author 이나영 -
dc.contributor.author 조예진 -
dc.contributor.author 이나윤 -
dc.contributor.author 염승식 -
dc.date.accessioned 2020-07-15T06:33:51Z -
dc.date.available 2020-07-15T06:33:51Z -
dc.date.created 2020-02-11 -
dc.date.issued 2019-11-05 -
dc.identifier.uri https://sciwatch.kiost.ac.kr/handle/2020.kiost/22032 -
dc.description.abstract We have successfully generated and assembled a draft genome sequence of the giant jellyfish, Nemopilema nomurai using PacBio RS long-read sequencing technology. Approximately 213-megabase genome of the jellyfish showed very high heterozyogocity. The assembly results showed that the N50 was 2,711,397 bases and the longest contig reached to 8,511,441 bases. A total of 18,528 high-quality protein-coding genes were predicted from 255 assembled scaffolds. The genome of N. nomuraishowed expanded gene families in neurotransmitter transport and metallopeptidase activities, and contracted gene families in nucleosome and chromatin organization. GO enrichment test of the genes involved in the expanded gene families showed the terms of neuron differentiation and regulation of neurogenesis. Also, these genes were significantly enriched in Regulation of actin cytoskeleton pathway by KEGG pathway annotation. The jellyfish genome will also provide us some clues on the molecular regulation of the scyphozoan metamorphosis. -
dc.description.uri 1 -
dc.language English -
dc.relation.isPartOf 15th International Conference on Toxicogenomics -
dc.title De novo assembly of the jellyfish, Nemophilema nomurai genome -
dc.type Conference -
dc.citation.conferencePlace KO -
dc.citation.endPage 228 -
dc.citation.startPage 228 -
dc.citation.title 15th International Conference on Toxicogenomics -
dc.contributor.alternativeName 이나영 -
dc.contributor.alternativeName 조예진 -
dc.contributor.alternativeName 이나윤 -
dc.contributor.alternativeName 염승식 -
dc.identifier.bibliographicCitation 15th International Conference on Toxicogenomics, pp.228 -
dc.description.journalClass 1 -
Appears in Collections:
South Sea Research Institute > Risk Assessment Research Center > 2. Conference Papers
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